Quick Start

This page provides a quick overview of running a PyGVAMP analysis pipeline.

For detailed installation instructions, see the Installation page.

Basic Usage

After installing PyGVAMP, you can run the analysis pipeline with:

python run_pipeline.py --config your_config.yaml

Output

The pipeline produces:

• Conformational state assignments for each frame
• Transition probability matrices
• Implied timescale plots
• Residue-level attention patterns
• Interactive HTML reports (viewable at pygvamp.com)

For full pipeline documentation, see Pipeline Execution.